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Contents:

  • Data QC
    • ALL data PCA
    • rm sample redo DESeq2
  • DE overlap
    • CC DD DE exp overlap
    • Cluster analysis of CC DD overlap DE genes FC
    • CC DD overlap DE clusters match gene number
  • Stage specific DE
    • CC stage specific DE gene analysis
    • DD stage specific DE gene analysis
  • heatmap of sugar corr gene
    • sugar_corr_gene_exp_pre_4heatmap1
    • sugar_corr_gene_exp_pre_4heatmap2
    • Do heatmap1-2
  • Network
    • Network 1
    • complex network (gene Suc TF)
    • style 3
    • complex network (Acetyl-CoA gene TF)
  • GRN Network
    • regulon heatmap
  • .rst

Welcome to review tomato graft omics project data analysis code documentation

Welcome to review tomato graft omics project data analysis code documentation#

Code for analysis Duan yundan’s tomato omincs data (RNA, metabolic, sugar) of grafting condition

Contents:

  • Data QC
  • DE overlap
  • Stage specific DE
  • heatmap of sugar corr gene
  • Network
  • GRN Network

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Data QC

By Zan Yuan, Yundan Duan

© Copyright seqyuan.